Filling large knot holes in pine floors before sanding is an important step that makes the difference between a patchy, uneven result and a smooth, professional finish. The good news is that with the right filler and a bit of patience, most homeowners can tackle this job themselves. Here's how to do it properly.
Why Knot Holes Need Special Attention
Pine is a common flooring timber in New Zealand homes, particularly in older villas and bungalows. Its natural knots give it character, but loose or missing knots leave holes that can trap dirt, cause splintering, and look unsightly under a clear finish. Small surface knots can often be sanded over, but holes deeper than about 3–5 mm need to be filled before you run a drum sander over them — otherwise the sander can catch the edge and tear the surrounding timber.
Choosing the Right Filler
Not all fillers are equal when it comes to pine floors. Here's a quick comparison:
| Filler Type | Best For | Sandable? | Stainable? | Notes |
|---|---|---|---|---|
| Two-part epoxy wood filler | Large, deep holes | Yes | Limited | Very hard, durable, minimal shrinkage |
| Sawdust + PVA glue mix | Medium holes, colour match | Yes | Yes | Use your own floor sawdust for best match |
| Polyester-based wood filler | Medium to large holes | Yes | No | Sets fast, very hard |
| Water-based wood putty | Small surface gaps only | Yes | Sometimes | Shrinks in deep holes — not ideal |
| Latex floor filler | Expansion gaps, fine cracks | Yes | No | Too flexible for large knot holes |
For large knot holes (anything over about 10 mm across or more than 5 mm deep), a two-part epoxy filler or a polyester-based filler is your best bet. These products cure hard, resist shrinkage, and won't pop out when the floor flexes. Brands like Sika and Ardex offer suitable products — check with your local trade supplier or Bunnings or Mitre 10 for what's available in your area.
If you want the best colour match and plan to use a stain or oil finish, mix fine sawdust from your own floor (collected during an initial light sand) with PVA wood glue to form a stiff paste. This is a time-honoured tradesperson's trick that blends beautifully under penetrating oils.
Step-by-Step: Filling Knot Holes
1. Prepare the Hole
- Remove any loose or crumbling knot material with a chisel or screwdriver.
- Vacuum out all dust and debris.
- If the hole goes all the way through the board, back it with masking tape on the underside (if accessible) or press a small piece of cardboard beneath it to stop filler falling through.
- Wipe the inside of the hole with a dry cloth — fillers bond better to clean, dry timber.
2. Mix and Apply the Filler
- Follow the manufacturer's instructions for mixing ratios on two-part products — getting this wrong affects cure time and hardness.
- Overfill the hole slightly (a millimetre or two proud of the surface). Most fillers shrink a little as they cure, and you'll sand back the excess anyway.
- Use a flexible filling knife or putty knife to press the filler firmly into the hole, working out any air pockets.
- Smooth the surface roughly level and leave to cure fully — don't rush this step.
3. Allow Full Cure Before Sanding
- Check the product's datasheet for cure time. Epoxy fillers may need 4–24 hours depending on temperature. NZ summers speed things up; cold South Island winters can slow cure significantly.
- Do not sand until the filler is completely hard. Sanding soft filler smears it across the floor and clogs your sandpaper fast.
4. Sand Back Flush
- Once cured, hand-sand the filled area flush using 60–80 grit sandpaper before running the drum sander over the whole floor.
- Check that the filled surface is level with the surrounding timber — any high spots will show under a gloss finish.
Tips for a Better Result
- Do a light pass with the drum sander first to reveal the true surface and collect fine sawdust for your DIY filler mix, then fill, cure, and do your main sanding passes.
- In older NZ homes, check whether your floor boards contain lead paint before sanding. If the house was built before 1980, consider getting a lead test kit from a hardware store. WorkSafe NZ has guidance on working safely with lead paint.
- If you're applying a clear polyurethane finish, be aware that epoxy fillers may appear slightly different in sheen to the surrounding timber. Test in an inconspicuous spot first.
- For a stained or oiled finish, the sawdust-and-PVA method almost always gives the most natural look.
When to Call a Professional
If your pine floor has extensive knot damage, structural rot, or boards that are loose, cupped, or badly warped, it's worth getting a qualified floor sander to assess the job before you start. Sanding a floor that has movement or structural issues can make things worse. A professional will also have access to commercial-grade fillers and the experience to match colours accurately across a whole floor.
You can find qualified local floor sanders on tradedirectory.co.nz — it's always worth getting a couple of quotes for larger jobs.
Note: Floor sanding and finishing is not restricted work under the NZ Building Code, so homeowners can legally do it themselves. However, if repairs involve replacing boards or structural subfloor work, check with your local council whether a building consent is required. MBIE Building Performance has information on Schedule 1 exemptions to help you understand what work needs consent.











